If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ), 'gf_id' => 'HOM05D000861', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000861' ), 'data_identifier' => 'HOM05D000861', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000861', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '694', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A03p20600' => 'bna', 'A03p37360' => 'bna', 'A03p37370' => 'bna', 'A03p37380' => 'bna', 'A04p28460' => 'bna', 'A05p08640' => 'bna', 'A05p37430' => 'bna', 'A05p37440' => 'bna', 'Aa31LG3G5570' => 'aar', 'Aa31LG3G5590' => 'aar', 'Aa31LG3G5600' => 'aar', 'Aa31LG9G15760' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.1074' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_340.51' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.1786' => 'aag', 'Actinidia01592' => 'ach', 'Actinidia17295' => 'ach', 'Actinidia22076' => 'ach', 'Actinidia30544' => 'ach', 'Actinidia30546' => 'ach', 'Actinidia38607' => 'ach', 'Ah.07g204280' => 'amhyb', 'Ah.09g231540' => 'amhyb', 'Ah.13g070940' => 'amhyb', 'Ah.13g075500' => 'amhyb', 'Ah.13g075510' => 'amhyb', 'AL3G23530' => 'aly', 'AL3G23540' => 'aly', 'AL3G23550' => 'aly', 'AL4G33650' => 'aly', 'Aqoxy1G00457' => 'aox', 'Aqoxy2G00523' => 'aox', 'Aqoxy2G00538' => 'aox', 'Aqoxy2G01335' => 'aox', 'Aqoxy4G02829' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2N6KDB' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.5F6CY5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.9W4D6L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BI8ZDZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FAYP6F' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LWV2XW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M3997H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.P9EW5D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S9NTH3' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WTTL5P' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.XG2Y2X' => 'arhy', 'AT2G37270' => 'ath', 'AT3G11940' => 'ath', 'AT3G11945' => 'ath', 'AT3G11950' => 'ath', 'ATR0737G014' => 'atr', 'ATR0737G050' => 'atr', 'ATR0789G014' => 'atr', 'ATR1101G108' => 'atr', 'Atru.chr1.1536' => 'acertr', 'Atru.chr8.1223' => 'acertr', 'Atru.chr8.1232' => 'acertr', 'Atru.chr8.1234' => 'acertr', 'AUR62004565' => 'cqu', 'AUR62005958' => 'cqu', 'AUR62015279' => 'cqu', 'AUR62015282' => 'cqu', 'AUR62025238' => 'cqu', 'AUR62028108' => 'cqu', 'AUR62028947' => 'cqu', 'AUR62032727' => 'cqu', 'AUR62032729' => 'cqu', 'AUR62033617' => 'cqu', 'BcaB01g03784' => 'bca', 'BcaB02g09295' => 'bca', 'BcaB04g18704' => 'bca', 'BcaB04g21109' => 'bca', 'BcaB06g25558' => 'bca', 'BcaB06g25559' => 'bca', 'BcaC01g04070' => 'bca', 'BcaC01g04071' => 'bca', 'BcaC02g07534' => 'bca', 'BcaC02g11846' => 'bca', 'BcaC05g29310' => 'bca', 'BcaC09g48185' => 'bca', 'BolC1t05279H' => 'bol', 'BolC3t14813H' => 'bol', 'BolC3t16802H' => 'bol', 'BolC3t16803H' => 'bol', 'BolC3t16804H' => 'bol', 'BolC4t22667H' => 'bol', 'BolC4t22695H' => 'bol', 'BolC4t22705H' => 'bol', 'BolC4t22731H' => 'bol', 'BolC4t28080H' => 'bol', 'BolC5t31252H' => 'bol', 'BolC5t34267H' => 'bol', 'BolC5t34268H' => 'bol', 'BraA01t04150Z' => 'bra', 'BraA02t09350Z' => 'bra', 'BraA03t11302Z' => 'bra', 'BraA03t12897Z' => 'bra', 'BraA03t12898Z' => 'bra', 'BraA03t12899Z' => 'bra', 'BraA04t18324Z' => 'bra', 'BraA05t19832Z' => 'bra', 'BraA05t22541Z' => 'bra', 'BraA05t22542Z' => 'bra', 'C03p24200' => 'bna', 'C03p45360' => 'bna', 'C03p45370' => 'bna', 'C03p45380' => 'bna', 'C04p10730' => 'bna', 'C04p65760' => 'bna', 'C04p65770' => 'bna', 'C05p55990' => 'bna', 'C05p56000' => 'bna', 'C05p56010' => 'bna', 'CAN.G186.36' => 'can', 'CAN.G317.11' => 'can', 'CAN.G960.43' => 'can', 'CANSAT25G0862' => 'cansat', 'CANSAT25G1540' => 'cansat', 'CANSAT25G2157' => 'cansat', 'CANSAT25G3350' => 'cansat', 'CANSAT25G3422' => 'cansat', 'CANSAT25G3559' => 'cansat', 'CANSAT25G3718' => 'cansat', 'CANSAT35G0029' => 'cansat', 'CANSAT54G0372' => 'cansat', 'CANSAT54G0686' => 'cansat', 'CANSAT54G1949' => 'cansat', 'CANSAT64G2731' => 'cansat', 'CARHR049320' => 'chi', 'CARHR052520' => 'chi', 'CARHR086480' => 'chi', 'CARHR086490' => 'chi', 'CARHR086500' => 'chi', 'CARHR132320' => 'chi', 'Carub.0003s1126' => 'cru', 'Carub.0003s1127' => 'cru', 'Carub.0003s1128' => 'cru', 'Carub.0004s1918' => 'cru', 'Ca_00040_v3' => 'car', 'Ca_00170_v3' => 'car', 'Ca_00568_v3' => 'car', 'Ca_00569_v3' => 'car', 'Ca_18105_v3' => 'car', 'Ca_26442_v3' => 'car', 'CBR_g19626' => 'cbr', 'CBR_g23522' => 'cbr', 'CBR_g34665' => 'cbr', 'CBR_g44333' => 'cbr', 'Cc06_g23200' => 'ccan', 'Cc06_g23220' => 'ccan', 'Cc09_g02090' => 'ccan', 'Cc10_g08810' => 'ccan', 'Cc11_g02550' => 'ccan', 'CDE02G2121' => 'cde', 'CDE02G2708' => 'cde', 'CDE05G2486' => 'cde', 'CDE11G0084' => 'cde', 'Cfa006350' => 'cfa', 'Cfa008013' => 'cfa', 'Cfa020107' => 'cfa', 'Cfa020110' => 'cfa', 'Cfa022688' => 'cfa', 'Ciclev10011942m.g' => 'ccl', 'Ciclev10012217m.g' => 'ccl', 'Ciclev10012772m.g' => 'ccl', 'Ciclev10012779m.g' => 'ccl', 'Ciclev10013690m.g' => 'ccl', 'CiPaw.04G006600' => 'cil', 'CiPaw.09G025500' => 'cil', 'CiPaw.09G025900' => 'cil', 'CiPaw.10G022500' => 'cil', 'CiPaw.10G023300' => 'cil', 'CiPaw.10G023500' => 'cil', 'ClCG04G000550' => 'cla', 'ClCG09G014830' => 'cla', 'ClCG09G014840' => 'cla', 'ClCG10G017840' => 'cla', 'ClCG11G001050' => 'cla', 'COL.COLO4_29438' => 'col', 'COL.COLO4_29443' => 'col', 'COL.COLO4_29445' => 'col', 'Cpa.g.sc103.75' => 'cpa', 'Cpa.g.sc85.10' => 'cpa', 'Cpa.g.sc85.11' => 'cpa', 'Cpa.g.sc85.15' => 'cpa', 'Cre03.g201150' => 'cre', 'Cre06.g283750' => 'cre', 'Cre06.g290950' => 'cre', 'CsaV3_1G015150' => 'csa', 'CsaV3_2G030730' => 'csa', 'CsaV3_3G038460' => 'csa', 'CsaV3_3G038470' => 'csa', 'CsaV3_4G031490' => 'csa', 'CsaV3_5G013080' => 'csa', 'CsaV3_7G022360' => 'csa', 'CsaV3_UNG013130' => 'csa', 'CsaV3_UNG232200' => 'csa', 'CSS0010896' => 'camsi', 'CSS0019023' => 'camsi', 'CSS0019173' => 'camsi', 'CSS0023364' => 'camsi', 'CSS0025554' => 'camsi', 'CSS0038853' => 'camsi', 'CSS0040474' => 'camsi', 'CSS0041935' => 'camsi', 'DCAR_008346' => 'dca', 'DCAR_009684' => 'dca', 'DCAR_013678' => 'dca', 'DCAR_013679' => 'dca', 'DCAR_027450' => 'dca', 'Dinv24024' => 'din', 'Dinv24026' => 'din', 'Dinv24029' => 'din', 'Dinv25026' => 'din', 'Dinv25031' => 'din', 'Dinv25032' => 'din', 'Duzib093G1474' => 'dzi', 'Duzib093G1597' => 'dzi', 'Duzib093G1971' => 'dzi', 'Duzib106G0533' => 'dzi', 'Duzib128G1835' => 'dzi', 'Duzib128G1936' => 'dzi', 'Duzib177G0265' => 'dzi', 'ECA233G0432' => 'eca', 'ECA233G3136' => 'eca', 'ECA234G4058' => 'eca', 'ECA248G2700' => 'eca', 'EL10Ac3g05143' => 'bvu', 'EL10Ac3g06841' => 'bvu', 'EL10Ac8g19073' => 'bvu', 'Eucgr.A01911' => 'egr', 'Eucgr.A02509' => 'egr', 'Eucgr.A02511' => 'egr', 'Eucgr.A02519' => 'egr', 'FAN01G1629' => 'fan', 'FAN02G1119' => 'fan', 'FAN02G2796' => 'fan', 'FAN05G0430' => 'fan', 'FAN05G3969' => 'fan', 'FAN05G5045' => 'fan', 'FAN05G5183' => 'fan', 'FAN06G3356' => 'fan', 'FAN09G2695' => 'fan', 'FAN09G2825' => 'fan', 'FAN10G0630' => 'fan', 'FAN14G2929' => 'fan', 'FAN14G4283' => 'fan', 'FAN15G2024' => 'fan', 'FAN20G2869' => 'fan', 'FAN24G3036' => 'fan', 'FAN27G1831' => 'fan', 'FvH4_2g26500' => 'fve', 'FvH4_3g33535' => 'fve', 'FvH4_4g10002' => 'fve', 'FvH4_5g31441' => 'fve', 'FvH4_6g14761' => 'fve', 'FvH4_6g21310' => 'fve', 'FvH4_6g21320' => 'fve', 'FvH4_7g05020' => 'fve', 'Glyma.02G167900' => 'gma', 'Glyma.02G168000' => 'gma', 'Glyma.02G168400' => 'gma', 'Glyma.03G206500' => 'gma', 'Glyma.09G103400' => 'gma', 'Glyma.09G103500' => 'gma', 'Glyma.12G201900' => 'gma', 'Glyma.13G300300' => 'gma', 'Glyma.19G204100' => 'gma', 'Gohir.A01G136200' => 'ghi', 'Gohir.A01G136400' => 'ghi', 'Gohir.A01G198900' => 'ghi', 'Gohir.A03G020901' => 'ghi', 'Gohir.A03G172200' => 'ghi', 'Gohir.A04G056500' => 'ghi', 'Gohir.A05G219200' => 'ghi', 'Gohir.A07G185100' => 'ghi', 'Gohir.A07G228700' => 'ghi', 'Gohir.A09G130700' => 'ghi', 'Gohir.A09G131000' => 'ghi', 'Gohir.A09G131200' => 'ghi', 'Gohir.A10G196800' => 'ghi', 'Gohir.A11G133600' => 'ghi', 'Gohir.A12G232200' => 'ghi', 'Gohir.A13G083600' => 'ghi', 'Gohir.D01G110200' => 'ghi', 'Gohir.D01G110300' => 'ghi', 'Gohir.D01G123300' => 'ghi', 'Gohir.D01G123600' => 'ghi', 'Gohir.D01G189050' => 'ghi', 'Gohir.D03G066700' => 'ghi', 'Gohir.D04G093800' => 'ghi', 'Gohir.D05G103200' => 'ghi', 'Gohir.D06G047450' => 'ghi', 'Gohir.D07G230600' => 'ghi', 'Gohir.D08G256501' => 'ghi', 'Gohir.D08G263500' => 'ghi', 'Gohir.D09G126600' => 'ghi', 'Gohir.D09G126900' => 'ghi', 'Gohir.D09G127200' => 'ghi', 'Gohir.D09G127233' => 'ghi', 'Gohir.D09G127266' => 'ghi', 'Gohir.D09G127300' => 'ghi', 'Gohir.D09G127400' => 'ghi', 'Gohir.D09G127500' => 'ghi', 'Gohir.D09G220300' => 'ghi', 'Gohir.D10G127200' => 'ghi', 'Gohir.D13G098100' => 'ghi', 'Gorai.002G154300' => 'gra', 'Gorai.002G154600' => 'gra', 'Gorai.002G189300' => 'gra', 'Gorai.002G232600' => 'gra', 'Gorai.003G077100' => 'gra', 'Gorai.005G034200' => 'gra', 'Gorai.006G145500' => 'gra', 'Gorai.006G145800' => 'gra', 'Gorai.006G146000' => 'gra', 'Gorai.009G396400' => 'gra', 'Gorai.011G118300' => 'gra', 'Gorai.013G079500' => 'gra', 'GSVIVG01026328001' => 'vvi', 'GSVIVG01033419001' => 'vvi', 'GSVIVG01033422001' => 'vvi', 'GSVIVG01033426001' => 'vvi', 'HanXRQChr02g0054411' => 'han', 'HanXRQChr02g0054431' => 'han', 'HanXRQChr02g0054481' => 'han', 'HanXRQChr02g0054661' => 'han', 'HanXRQChr02g0054701' => 'han', 'HanXRQChr03g0090501' => 'han', 'HanXRQChr11g0328401' => 'han', 'HanXRQChr12g0359061' => 'han', 'HanXRQChr13g0397811' => 'han', 'HanXRQChr13g0397821' => 'han', 'Haze_04427' => 'cav', 'Haze_14046' => 'cav', 'Haze_14057' => 'cav', 'Haze_20079' => 'cav', 'Haze_20083' => 'cav', 'Haze_20084' => 'cav', 'Haze_26459' => 'cav', 'Hma1.2p1_0075F.1_g039410' => 'hma', 'Hma1.2p1_0516F.1_g170530' => 'hma', 'Hma1.2p1_0636F.1_g193240' => 'hma', 'Hma1.2p1_0636F.1_g193250' => 'hma', 'Hma1.2p1_0636F.1_g193280' => 'hma', 'Hma1.2p1_0647F.1_g195060' => 'hma', 'HPP92_001050' => 'vpl', 'HPP92_003796' => 'vpl', 'HPP92_003821' => 'vpl', 'HPP92_003822' => 'vpl', 'HPP92_008306' => 'vpl', 'HPP92_021500' => 'vpl', 'HPP92_021519' => 'vpl', 'Hund09733' => 'sun', 'Hund09735' => 'sun', 'Hund09737' => 'sun', 'Hund09738' => 'sun', 'Hund09740' => 'sun', 'Hund18398' => 'sun', 'Hund19222' => 'sun', 'Lalb_Chr01g0017651' => 'lal', 'Lalb_Chr15g0085431' => 'lal', 'Lalb_Chr18g0053911' => 'lal', 'Lalb_Chr20g0111111' => 'lal', 'Lalb_Chr21g0316161' => 'lal', 'Lalb_Chr21g0316301' => 'lal', 'Lalb_Chr25g0287681' => 'lal', 'Lalb_Chr25g0287711' => 'lal', 'Lj1A65T56' => 'lonja', 'Lj1C1135G12' => 'lonja', 'Lj1g0012940' => 'lja', 'Lj1g0014118' => 'lja', 'Lj2A1153T47' => 'lonja', 'Lj2C359T12' => 'lonja', 'Lj2C359T6' => 'lonja', 'Lj5g0002775' => 'lja', 'Lj5g0007588' => 'lja', 'Lj5g0015350' => 'lja', 'Lj5g0017130' => 'lja', 'Lj5g0025063' => 'lja', 'Lj9A699T53' => 'lonja', 'Lsat_1_v5_gn_1_59881' => 'lsa', 'Lsat_1_v5_gn_2_58480' => 'lsa', 'Lsat_1_v5_gn_2_66000' => 'lsa', 'Lsat_1_v5_gn_3_60541' => 'lsa', 'Lsat_1_v5_gn_3_60560' => 'lsa', 'Lsat_1_v5_gn_4_6460' => 'lsa', 'Lsat_1_v5_gn_5_900' => 'lsa', 'Lsat_1_v5_gn_6_37581' => 'lsa', 'Lsat_1_v5_gn_6_37600' => 'lsa', 'Manes.08G039000' => 'mes', 'Manes.08G039400' => 'mes', 'Manes.08G039800' => 'mes', 'Manes.09G040600' => 'mes', 'Manes.09G041000' => 'mes', 'Mapoly0037s0139' => 'mpo', 'Mapoly0057s0035' => 'mpo', 'Mapoly0082s0041' => 'mpo', 'Mapoly0082s0042' => 'mpo', 'MBI01_g21127_MAGBIO' => 'mbi', 'MBI01_g29959_MAGBIO' => 'mbi', 'MBI01_g29964_MAGBIO' => 'mbi', 'MBI01_g43717_MAGBIO' => 'mbi', 'MBI02_g17771_MAGBIO' => 'mbi', 'MBI04_g09716_MAGBIO' => 'mbi', 'MBI04_g14918_MAGBIO' => 'mbi', 'MBI07_g11189_MAGBIO' => 'mbi', 'MBI07_g28521_MAGBIO' => 'mbi', 'MBI11_g32528_MAGBIO' => 'mbi', 'MBI13_g36810_MAGBIO' => 'mbi', 'MCO07G162' => 'mco', 'MCO07G373' => 'mco', 'MCO14G045' => 'mco', 'MD02G1263700' => 'mdo', 'MD04G1033100' => 'mdo', 'MD07G1054500' => 'mdo', 'MD12G1044700' => 'mdo', 'MD12G1049500' => 'mdo', 'MD12G1049600' => 'mdo', 'MD12G1050300' => 'mdo', 'MD14G1043500' => 'mdo', 'MD14G1048400' => 'mdo', 'MD14G1048600' => 'mdo', 'MD14G1048800' => 'mdo', 'Medtr0306s0010' => 'mtr', 'Medtr0515s0010' => 'mtr', 'Medtr1g054305' => 'mtr', 'Medtr1g054310' => 'mtr', 'Medtr1g054715' => 'mtr', 'Medtr7g107380' => 'mtr', 'MELO3C009074.2' => 'cme', 'MELO3C009589.2' => 'cme', 'MELO3C012670.2' => 'cme', 'MELO3C020049.2' => 'cme', 'MELO3C025582.2' => 'cme', 'MELO3C031003.2' => 'cme', 'Migut.C01187' => 'egut', 'Migut.C01367' => 'egut', 'Migut.J01880' => 'egut', 'Migut.K00011' => 'egut', 'MSTRG.10856' => 'ama', 'MSTRG.1589' => 'ama', 'MSTRG.26070' => 'ama', 'MSTRG.26071' => 'ama', 'MSTRG.6506' => 'ama', 'Nitab4.5_0000358g0160' => 'nta', 'Nitab4.5_0000358g0170' => 'nta', 'Nitab4.5_0000575g0240' => 'nta', 'Nitab4.5_0000658g0080' => 'nta', 'Nitab4.5_0000691g0150' => 'nta', 'Nitab4.5_0000691g0180' => 'nta', 'Nitab4.5_0002532g0070' => 'nta', 'Nitab4.5_0002611g0060' => 'nta', 'Nitab4.5_0002769g0020' => 'nta', 'Nitab4.5_0002769g0050' => 'nta', 'Nitab4.5_0004584g0020' => 'nta', 'Nitab4.5_0005550g0060' => 'nta', 'Nitab4.5_0006500g0020' => 'nta', 'Nitab4.5_0007421g0010' => 'nta', 'Nitab4.5_0008820g0010' => 'nta', 'Nitab4.5_0014603g0010' => 'nta', 'Nn1g02627' => 'nnu', 'Nn1g07678' => 'nnu', 'Nn1g09063' => 'nnu', 'Nn2g14698' => 'nnu', 'Nn2g15838' => 'nnu', 'Nn5g29291' => 'nnu', 'Nn5g30627' => 'nnu', 'Nn5g31072' => 'nnu', 'Nn7g35883' => 'nnu', 'Nn7g35893' => 'nnu', 'Nn7g37450' => 'nnu', 'Oeu003219.1' => 'oeu', 'Oeu013904.1' => 'oeu', 'Oeu022105.1' => 'oeu', 'Oeu028103.1' => 'oeu', 'Oeu051191.1' => 'oeu', 'Oeu051771.1' => 'oeu', 'Oeu057601.3' => 'oeu', 'Os01g0100700' => 'osa', 'Os02g0605500' => 'osa', 'Os04g0217900' => 'osa', 'Os04g0218900' => 'osa', 'Os05g0305200' => 'osa', 'Os11g0482000' => 'osa', 'Os12g0181300' => 'osa', 'Peaxi162Scf00003g04712' => 'pax', 'Peaxi162Scf00009g02111' => 'pax', 'Peaxi162Scf00072g00619' => 'pax', 'Peaxi162Scf00078g00422' => 'pax', 'Peaxi162Scf00127g00222' => 'pax', 'Peaxi162Scf00127g00223' => 'pax', 'Peaxi162Scf00127g00227' => 'pax', 'Peaxi162Scf00168g01515' => 'pax', 'Peaxi162Scf00179g00119' => 'pax', 'Peaxi162Scf00195g00910' => 'pax', 'Peaxi162Scf00374g00720' => 'pax', 'Peaxi162Scf00463g00128' => 'pax', 'Peaxi162Scf00463g10014' => 'pax', 'Peaxi162Scf00470g00024' => 'pax', 'Peaxi162Scf00593g00311' => 'pax', 'Peaxi162Scf00696g00031' => 'pax', 'Peaxi162Scf00760g00214' => 'pax', 'Peaxi162Scf00939g00017' => 'pax', 'Peaxi162Scf01056g00016' => 'pax', 'Peaxi162Scf01130g00212' => 'pax', 'Peaxi162Scf01397g00001' => 'pax', 'PGR004G1046' => 'pgr', 'PGR004G2528' => 'pgr', 'PGR004G2605' => 'pgr', 'PGR142G3468' => 'pgr', 'PGSC0003DMG400002212' => 'stu', 'PGSC0003DMG400008351' => 'stu', 'PGSC0003DMG400008642' => 'stu', 'PGSC0003DMG400016019' => 'stu', 'PGSC0003DMG400017812' => 'stu', 'Phvul.001G200100' => 'pvu', 'Phvul.005G107000' => 'pvu', 'Phvul.007G262800' => 'pvu', 'Phvul.007G263400' => 'pvu', 'Phvul.007G263566' => 'pvu', 'Phvul.007G263632' => 'pvu', 'Phvul.007G264200' => 'pvu', 'Potri.006G197600' => 'ptr', 'Potri.006G197700' => 'ptr', 'Potri.016G062900' => 'ptr', 'Potri.016G063200' => 'ptr', 'Pp3c13_13880' => 'ppa', 'Pp3c15_23520' => 'ppa', 'Pp3c20_18970' => 'ppa', 'Pp3c23_6150' => 'ppa', 'Pp3c24_18880' => 'ppa', 'Pp3c24_6130' => 'ppa', 'Pp3c8_16820' => 'ppa', 'Pp3c8_16860' => 'ppa', 'Pp3c9_24720' => 'ppa', 'PRCOL_00000810' => 'pco', 'PRCOL_00002048' => 'pco', 'PRCOL_00006899' => 'pco', 'Prupe.1G502000' => 'ppe', 'Prupe.2G061200' => 'ppe', 'Prupe.7G086500' => 'ppe', 'Prupe.7G086600' => 'ppe', 'Prupe.7G086700' => 'ppe', 'Psat0s2632g0040' => 'psa', 'Psat1g222880' => 'psa', 'Psat5g174960' => 'psa', 'Psat6g110040' => 'psa', 'Psat6g110280' => 'psa', 'Psat6g110320' => 'psa', 'PSO017G0564' => 'pso', 'PSO017G3327' => 'pso', 'PSO063G3798' => 'pso', 'PSO063G4353' => 'pso', 'PSO339G1484' => 'pso', 'PSO339G2468' => 'pso', 'PSO384G1311' => 'pso', 'PSO384G2614' => 'pso', 'PSO425G0018' => 'pso', 'QL02p055374' => 'qlo', 'QL02p056435' => 'qlo', 'QL07p025600' => 'qlo', 'QL07p025798' => 'qlo', 'QL07p025820' => 'qlo', 'RcHm_v2.0_Chr0c36g0502911' => 'rch', 'RcHm_v2.0_Chr1g0331291' => 'rch', 'RcHm_v2.0_Chr1g0331341' => 'rch', 'RcHm_v2.0_Chr2g0129001' => 'rch', 'RcHm_v2.0_Chr3g0477901' => 'rch', 'RcHm_v2.0_Chr3g0477931' => 'rch', 'RcHm_v2.0_Chr3g0486361' => 'rch', 'RcHm_v2.0_Chr3g0486371' => 'rch', 'RcHm_v2.0_Chr3g0486481' => 'rch', 'RcHm_v2.0_Chr6g0295301' => 'rch', 'RcHm_v2.0_Chr7g0233501' => 'rch', 'Rhsim03G0001900' => 'rsi', 'Rhsim03G0002000' => 'rsi', 'Rhsim04G0091800' => 'rsi', 'Rhsim10G0079800' => 'rsi', 'Sabra06G0151900' => 'sbr', 'Sabra06G0152100' => 'sbr', 'Sabra06G0152200' => 'sbr', 'Sabra16G0064900' => 'sbr', 'Sabra16G0065200' => 'sbr', 'Sabra16G0065500' => 'sbr', 'Sabra16G0065600' => 'sbr', 'SalBow1G0085' => 'sbo', 'SalBow6G0950' => 'sbo', 'SalBow6G1870' => 'sbo', 'SalBow6G5603' => 'sbo', 'Sc13g0002540' => 'sci', 'Sc13g0002570' => 'sci', 'Sc19g0006280' => 'sci', 'Sc25g0005020' => 'sci', 'Sed0000065' => 'sed', 'Sed0004581' => 'sed', 'Sed0012727' => 'sed', 'Sed0019693' => 'sed', 'Sed0023706' => 'sed', 'Sed0024817' => 'sed', 'Sed0025547' => 'sed', 'Sed0026810' => 'sed', 'Sed0027659' => 'sed', 'SEGI_04708' => 'sgi', 'SEGI_19220' => 'sgi', 'SEGI_20252' => 'sgi', 'SEGI_31524' => 'sgi', 'SGA_v2.0_scaffold118G32596' => 'sas', 'SGA_v2.0_scaffold24G10636' => 'sas', 'SGA_v2.0_scaffold274G46507' => 'sas', 'SGA_v2.0_scaffold274G46509' => 'sas', 'SGA_v2.0_scaffold69G23031' => 'sas', 'SGA_v2.0_scaffold94G28406' => 'sas', 'SHI28323' => 'shi', 'SMO194G0050' => 'smo', 'SMO196G0239' => 'smo', 'SMO203G0078' => 'smo', 'SMO347G0442' => 'smo', 'SMO358G0316' => 'smo', 'SMO361G0253' => 'smo', 'SMO364G0564' => 'smo', 'Solyc03g045110.3' => 'sly', 'Solyc03g051810.4' => 'sly', 'Solyc04g009600.3' => 'sly', 'Solyc04g049290.2' => 'sly', 'Solyc10g078620.1' => 'sly', 'Solyc11g042610.2' => 'sly', 'Sopen03g009590' => 'spe', 'Sopen03g011180' => 'spe', 'Sopen04g004750' => 'spe', 'Sopen04g019180' => 'spe', 'Sopen10g029250' => 'spe', 'Sopen11g018760' => 'spe', 'Sp3g10150' => 'spa', 'Sp3g10160' => 'spa', 'Sp3g10170' => 'spa', 'Sp4g19590' => 'spa', 'TAR369G0660' => 'tar', 'TAR369G1036' => 'tar', 'TAR371G0304' => 'tar', 'TAR375G0848' => 'tar', 'TAR623G0533' => 'tar', 'TAR626G0577' => 'tar', 'TAR626G1779' => 'tar', 'TAR633G2067' => 'tar', 'TAR636G2652' => 'tar', 'TAR636G3394' => 'tar', 'THA.LOC104799272' => 'tha', 'THA.LOC104799273' => 'tha', 'THA.LOC104799274' => 'tha', 'THA.LOC104809939' => 'tha', 'THA.LOC104826781' => 'tha', 'THA.LOC104826782' => 'tha', 'Thecc.05G180600' => 'tca', 'Thecc.05G181000' => 'tca', 'Thecc.05G181200' => 'tca', 'Thhalv10017239m.g' => 'esa', 'Thhalv10020413m.g' => 'esa', 'Thhalv10020917m.g' => 'esa', 'Thhalv10021528m.g' => 'esa', 'TPR.G14492' => 'tpr', 'TPR.G14497' => 'tpr', 'TPR.G2104' => 'tpr', 'TPR.G29255' => 'tpr', 'TPR.G31109' => 'tpr', 'TPR.G32296' => 'tpr', 'TPR.G7387' => 'tpr', 'TPR.G908' => 'tpr', 'TWI12G0319' => 'twi', 'TWI53G1325' => 'twi', 'TWI53G2126' => 'twi', 'TWI56G0610' => 'twi', 'TWI74G1428' => 'twi', 'unitig_0.g512' => 'ugi', 'unitig_736.g22310' => 'ugi', 'unitig_749.g14024' => 'ugi', 'unitig_749.g14026' => 'ugi', 'unitig_899.g15071' => 'ugi', 'vmacro05483' => 'vma', 'vmacro09130' => 'vma', 'vmacro12559' => 'vma', 'vmacro12560' => 'vma', 'vmacro22548' => 'vma', 'VMungo0720G1643' => 'vmu', 'VMungo0720G2154' => 'vmu', 'VMungo0720G2833' => 'vmu', 'VMungo1383G1884' => 'vmu', 'Zm00001eb093630' => 'zma', 'Zm00001eb107520' => 'zma', 'Zm00001eb195790' => 'zma', 'Zm00001eb246660' => 'zma', 'Zm00001eb285610' => 'zma', 'Zm00001eb334050' => 'zma', 'Zm00001eb421970' => 'zma' ) $gf_id = 'HOM05D000861' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000861' ) $data_identifier = 'HOM05D000861' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 6, 'amhyb' => (int) 5, 'aly' => (int) 4, 'aox' => (int) 5, 'arhy' => (int) 11, 'ath' => (int) 4, 'atr' => (int) 4, 'acertr' => (int) 4, 'cqu' => (int) 10, 'bca' => (int) 12, 'bol' => (int) 13, 'bra' => (int) 10, 'can' => (int) 3, 'cansat' => (int) 12, 'chi' => (int) 6, 'cru' => (int) 4, 'car' => (int) 6, 'cbr' => (int) 4, 'ccan' => (int) 5, 'cde' => (int) 4, 'cfa' => (int) 5, 'ccl' => (int) 5, 'cil' => (int) 6, 'cla' => (int) 5, 'col' => (int) 3, 'cpa' => (int) 4, 'cre' => (int) 3, 'csa' => (int) 9, 'camsi' => (int) 8, 'dca' => (int) 5, 'din' => (int) 6, 'dzi' => (int) 7, 'eca' => (int) 4, 'bvu' => (int) 3, 'egr' => (int) 4, 'fan' => (int) 17, 'fve' => (int) 8, 'gma' => (int) 9, 'ghi' => (int) 39, 'gra' => (int) 12, 'vvi' => (int) 4, 'han' => (int) 10, 'cav' => (int) 7, 'hma' => (int) 6, 'vpl' => (int) 7, 'sun' => (int) 7, 'lal' => (int) 8, 'lonja' => (int) 6, 'lja' => (int) 7, 'lsa' => (int) 9, 'mes' => (int) 5, 'mpo' => (int) 4, 'mbi' => (int) 11, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 6, 'egut' => (int) 4, 'ama' => (int) 5, 'nta' => (int) 16, 'nnu' => (int) 11, 'oeu' => (int) 7, 'osa' => (int) 7, 'pax' => (int) 21, 'pgr' => (int) 4, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppa' => (int) 9, 'pco' => (int) 3, 'ppe' => (int) 5, 'psa' => (int) 6, 'pso' => (int) 9, 'qlo' => (int) 5, 'rch' => (int) 11, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 4, 'sci' => (int) 4, 'sed' => (int) 9, 'sgi' => (int) 4, 'sas' => (int) 6, 'shi' => (int) 1, 'smo' => (int) 7, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 4, 'tar' => (int) 10, 'tha' => (int) 6, 'tca' => (int) 3, 'esa' => (int) 4, 'tpr' => (int) 8, 'twi' => (int) 5, 'ugi' => (int) 5, 'vma' => (int) 5, 'vmu' => (int) 4, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb421970' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1